This course will allow you to learn structural bioinformatics concepts (proteins) to be able to practice on online servers. In this way you will be able to do protein-protein docking studies in a theoretical and practical way, all from your computer. You will also learn to describe non-covalent protein-protein recognition interactions.   

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TEMARY

Unit I: Introduction to Protein-Protein Docking: (3 hours) (theoretical)

1. Introduction to Protein-Protein Docking.

2. Classification of protein-protein docking methodologies.

   1. Blind docking

   2. Directed Docking

   3. Flexible Docking

3. What Kind of Method to Use in Protein-Protein Docking Prediction?

Unit II: Protein-protein docking prediction techniques: (6 hours) (practical).

1. Protein-protein docking using servers

   1. HDOCK

   2. ClusPro

   3. FRODOCK 2.0

   4. SwarmDock

   5. HADDOCK

   6. PatchDock

   7. SymmDock

Unit III: Evaluation and analysis of protein-protein docking: (3 hours) (practical).

1. Evaluation and selection of predicted models.

2. Analysis of the interface between protein chains.

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